Signposts to chiral drugs: organic synthesis in action/ Vitomir Sunjic, Michael J. Parnham

By: Sunjic, VitomirContributor(s): Parnham, Michael JMaterial type: TextTextPublication details: New York : Springre, 2011Description: 252p. : 24cmISBN: 9783034801249Subject(s): Drug Discovery -- methods | Pharmaceutical Preparations -- chemistry | Structure-Activity RelationshipDDC classification: 540.5
Contents:
1 Organic Synthesis in Drug Discovery and Development 1 1.1 Introduction 1 1.2 Synthetic Organic Chemistry in Pharmaceutical R&D 2 1.3 New Concepts in the Drug Discovery Process 5 1.3.1 The Impact of Natural Products on Modern Drug Discovery 6 1.3.2 Biologically Orientated Synthesis in Drug Discovery 8 1.3.3 Incorporation of Genomics and DNA-templated Synthesis into Drug Discovery 9 1.4 Conclusion 11 Reference 11 2 Aliskiren Fumarate 13 2.1 Introduction 13 2.2 Renin and the Mechanism of Aliskiren 14 2.3 Structural Characteristics and Synthetic Approaches to Aliskiren 16 2.3.1 Strategy Based on Visual Imagery, Starting from Nature's Chiral Pool: A Dali-Like Presentation of Objects 18 2.3.2 Fine-Tuning of the Chiral Ligand for the Rh Complex: Hydrogenation of the Selected Substrate with Extreme Enantioselectivities 21 2.4 Conclusion 26 References 26 3 (R)-K-13675 29 3.1 Introduction 29 3.2 Peroxisome Proliferator-Activated Receptor α Agonists 29 3.2.1 β-Phenylpropionic Acids 30 3.2.2 α-Alkoxy-β-Arylprionic Acids 31 3.2.3 α-Aryloxy-β-Phenyl Propionic Acids 33 3.2.4 Oxybenzoylglycine Derivatives 34 3.3 Non-hydrolytic Anomalous Lactone Ring-Opening 35 3.4 Mitsunobu Reaction in the Ether Bond Formation 38 3.5 Conclusion 42 References 42 4 Sitagliptin Phosphate Monohydrate 45 4.1 Introduction 45 4.2 Endogenous Glucoregulatory Peptide Hormones and Dipeptidoyl Peptides IV (DPP4) Inhibitors 46 4.3 Synthesis with C-acyl Meldrum's Acid as the N-Acylating Agent 47 4.4 Highly Enantioselective Hydrogenation of Unprotected β-Enamino Amides and the Use of Josiphos-Ligands 50 4.5 Ammonium Chloride, an Effective Promoter of Catalytic Enantioselective Hydrogenation 52 4.6 Conclusion 53 References 53 5 Biaryl Units in Valsartan and Vancomycin 55 5.1 Introduction 55 5.2 Angiotension AT Receptor, a G-Protein-Coupled Receptor 56 5.3 Cu-Promoted Catalytic Decarboxylative Biaryl Synthesis, a Biomimetic Type Aerobic Decarboxylation 59 5.4 Streiselective Approach to the Axially Chiral Biaryl System; the Case of Vancomycin 63 5.5 Conclusion 67 References 67 6 3-Amino-1,4-Bezodiazepines 69 6.1 Introduction 69 6.2 3-Amino-1,4-Benzodiazepine Derivatives as γ-Secretase Inhibitors 70 6.3 Configurational Stability: Racemization and Enantiomerization 71 6.4 Crystallization Induced Asymmetric Transformation 74 6.5 Asymmetric Ireland-Claisen Rearrangement 74 6.6 Hydrobroation of the Terminal C=C Bond: Anti-Markovnikov Hydratation 76 6.7 Crustallization-Induced Asummetric Transformation in the Synthesis of L-768,673 79 6.8 Conclusion 81 References 81 7 Sertraline 83 7.1 Introduction 83 7.2 Synaptosomal Serotonin Uptake and Its Selective Inhibitors (SSRI) 84 7.3 Action of Sertraline and Its Protein Target 85 7.4 General Synthetic Route 86 7.5 Stereoselective Reduction of Ketones and Imines Under Kinetic and Thermodynamic Control 87 7.5.1 Diastereoselectivity of Hudrogenation of rac-tetralone-Methylimine: The Old (MeNH2/TiCl4/Toluence) Method Is Improved by Using MeNH2/EtOH-Pd/CaCO3, 60-65°C in a Telescoped Process 87 7.5.2 Kinetic Resolution of Racemic Methylamine: Hydrosilylation by (R,R)-(EBTHI)TiF2/PhSiH3 Catalytic System 88 7.5.3 Catalytic Epimerization of the Trans- to the Cis-Isomer of Sertralilne 90 7.5.4 Stereoselective Reduction of Tetralone by Chiral Diphenyloxazaborolidine 91 7.6 Desymmetrization of Oxabenzonorbornadiene, Suzuki Coupling of Arylboronic Acids and Vinyl Halides 92 7.7 Pd-Catalyzed (Tsuji-Trost) Coupling of Arylboronic Acids and Allylic Esters 94 7.8 Simulated Moving Bed in the Commercial Production of Sertaline 97 7.9 Conclusion 101 References 101 8 1,2-Dihydroquinolines 103 8.1 Introduction 103 8.2 Glucocorticoid Receptor 103 8.3 Asymmetric Organocatalysis: Introducing a Thiourea Catalyst for the Petasis Reaction 105 8.3.1 General Consideration of the Petasis Reaction 106 8.3.2 Catalytic, Enantioselective Petasis Reaction 109 8.4 Multi-component Reactions: General Concept and Examples 112 8.4.1 General Concept of Multi-component Reactions 112 8.4.2 Efficient, Isocyanide-Based Ugi Multi-component Reactions 113 References 115 9 (-) -Menthol 117 9.1 Introduction 117 9.2 Natural Sources and First Technological Production of (-) -Menthol 118 9.3 Enantioselective Allylic Amine-Enamine-Imine Rearrangement, Catalysed by Rh(I)-(-) -BINAP Complex 119 9.4 Production Scale Synthesis of Both Enantiomers 122 9.5 Conclusion 123 References 123 10 Fexofenadine Hydrochloride 125 10.1 Introduction 125 10.2 Histamine Receptors as Biological Targets for Anti-allergy Drugs 126 10.3 Absolute Configuration and "Racemic Switch" 127 10.4.1 ZnBr2-Catalyzed Rearrangement of α-Haloketones to Terminal Carboxylic Acids 131 10.4.2 Microbial Oxidation of Non-activated C-H Bond 135 10.4.3 Bioisosterism: Silicon Switch of Fexofenadine to Sila-Fexofenadine 137 10.5 Conclusion 139 References 139 11 Montelukast Sodium 141 11.1 Introduction 141 11.2 Leukotriene D4 Receptor (LTD4), CysLT-1 Receptor Antagonists 142 11.3 Hydroboration of Ketones with Boranes from α-Pinenes and the Non-linear Effect in Asymmetric Reactions 144 11.4 Ru(II) Catalyzed Enantioselective Hydrogen Transfer 148 11.5 Biocatalytic Reduction with Ketoreductase KRED (KetoREDuctase) 150 11.6 CeCl3-THF Solvate as a Promoter of the Grignard Reaction: Phase Transfer Catalysis 150 11.7 Conclusion 152 References 153 12 Thilactone Peptides as Antibacterial Peptidomimetics 155 12.1 Introduction 155 12.2 Virulence and Quououm-Sensing System of Stapyylococcus aureus 156 12.3 Development of Chemical Ligation in Peptide Synthesis 158 12.4 Development of Native Chemical Ligation: Chemoselectivity in Peptide Synthesis 160 12.5 Development of NCL in Thiolactone Petide Synthesis 163 12.6 Conclusion 167 References 167 13 Efavirenz 169 13.1 Introduction 169 13.2 HIV-1 Reverse Transcriptase Inhibitors 170 13.2.1 Setric Interactions at the Active Site 171 13.3 Asymmetric Addition of Alkyne Anion to C=O Bond with Formation of Chiral Li+ Aggregates 173 13.3.1 Mechanism of the Chirality Transfer 173 13.3.2 Equilibration of Lithium Aggregates and the Effect of Their Relative Stability on Enantioselectivity 175 13.4 Scale-up of Alkynylation Promoted by the Use fo Et2Zn 176 13.5 Conclusion 177 References 177 14 Paclitaxel 179 14.1 Introduction 179 14.2 Disturbed Dynamics of Cellular Microtubules by Binding to β-Tubulin 180 14.3 Three Selected Synthetic Transformations on the Pathway to Paclitaxel 181 14.3.1 Intramolecular Heck Reaction on the Synthetic Route to Baccatin III 182 14.3.2 Trifunctional Catalyst for Biomimetic Synthesis of Chiral Diols: Synthesis of the Paclitaxel Side-Chain 185 14.3.3 Zr-Complex Catalysis in the Reductive N-deacylation of Taxanes to the Primary Amine, the Key Precursor of Paclitaxel 192 14.4 Conclusion 194 References 194 15 Neoglycoconjugate 197 15.1 Introduction 197 15.2 Human, α-1,3-Fucosyltransferase IV (Fuc-T) 198 15.3 Click Chemistry: Energetically Preferred Reactions 200 15.4 Target-Guided Synthesis or Freeze-Frame Click Chemistry 202 15.5 Application of Click Chemistry to the Synthesis of Neoglycoconjugate 1 205 15.6 Conclusion 207 References 207 16 12-Aza-Epothilones 209 16.1 Introduction 209 16.2 Epothilones: Mechanism of Action and Structure-Activity Relationships 210 16.3 Extensive vs. Peripheral Structure Modifications of Natural Products 212 16.4 Ring Closure Metathesis: An Efficient Approach to Macrocyclic "Non-natural Natural Products" 213 16.5 Diimide Reduction of the Allylic C=C Bond 220 16.6 Conclusion 222 References 222 Synthetic Methods and Concepts Discussed in the Chapters 225
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Includes index.

1 Organic Synthesis in Drug Discovery and Development 1

1.1 Introduction 1

1.2 Synthetic Organic Chemistry in Pharmaceutical R&D 2

1.3 New Concepts in the Drug Discovery Process 5

1.3.1 The Impact of Natural Products on Modern Drug Discovery 6

1.3.2 Biologically Orientated Synthesis in Drug Discovery 8

1.3.3 Incorporation of Genomics and DNA-templated Synthesis into Drug Discovery 9

1.4 Conclusion 11

Reference 11

2 Aliskiren Fumarate 13

2.1 Introduction 13

2.2 Renin and the Mechanism of Aliskiren 14

2.3 Structural Characteristics and Synthetic Approaches to Aliskiren 16

2.3.1 Strategy Based on Visual Imagery, Starting from Nature's Chiral Pool: A Dali-Like Presentation of Objects 18

2.3.2 Fine-Tuning of the Chiral Ligand for the Rh Complex: Hydrogenation of the Selected Substrate with Extreme Enantioselectivities 21

2.4 Conclusion 26

References 26

3 (R)-K-13675 29

3.1 Introduction 29

3.2 Peroxisome Proliferator-Activated Receptor α Agonists 29

3.2.1 β-Phenylpropionic Acids 30

3.2.2 α-Alkoxy-β-Arylprionic Acids 31

3.2.3 α-Aryloxy-β-Phenyl Propionic Acids 33

3.2.4 Oxybenzoylglycine Derivatives 34

3.3 Non-hydrolytic Anomalous Lactone Ring-Opening 35

3.4 Mitsunobu Reaction in the Ether Bond Formation 38

3.5 Conclusion 42

References 42

4 Sitagliptin Phosphate Monohydrate 45

4.1 Introduction 45

4.2 Endogenous Glucoregulatory Peptide Hormones and Dipeptidoyl Peptides IV (DPP4) Inhibitors 46

4.3 Synthesis with C-acyl Meldrum's Acid as the N-Acylating Agent 47

4.4 Highly Enantioselective Hydrogenation of Unprotected β-Enamino Amides and the Use of Josiphos-Ligands 50

4.5 Ammonium Chloride, an Effective Promoter of Catalytic Enantioselective Hydrogenation 52

4.6 Conclusion 53

References 53

5 Biaryl Units in Valsartan and Vancomycin 55

5.1 Introduction 55

5.2 Angiotension AT Receptor, a G-Protein-Coupled Receptor 56

5.3 Cu-Promoted Catalytic Decarboxylative Biaryl Synthesis, a Biomimetic Type Aerobic Decarboxylation 59

5.4 Streiselective Approach to the Axially Chiral Biaryl System; the Case of Vancomycin 63

5.5 Conclusion 67

References 67

6 3-Amino-1,4-Bezodiazepines 69

6.1 Introduction 69

6.2 3-Amino-1,4-Benzodiazepine Derivatives as γ-Secretase Inhibitors 70

6.3 Configurational Stability: Racemization and Enantiomerization 71

6.4 Crystallization Induced Asymmetric Transformation 74

6.5 Asymmetric Ireland-Claisen Rearrangement 74

6.6 Hydrobroation of the Terminal C=C Bond: Anti-Markovnikov Hydratation 76

6.7 Crustallization-Induced Asummetric Transformation in the Synthesis of L-768,673 79

6.8 Conclusion 81

References 81

7 Sertraline 83

7.1 Introduction 83

7.2 Synaptosomal Serotonin Uptake and Its Selective Inhibitors (SSRI) 84

7.3 Action of Sertraline and Its Protein Target 85

7.4 General Synthetic Route 86

7.5 Stereoselective Reduction of Ketones and Imines Under Kinetic and Thermodynamic Control 87

7.5.1 Diastereoselectivity of Hudrogenation of rac-tetralone-Methylimine: The Old (MeNH2/TiCl4/Toluence) Method Is Improved by Using MeNH2/EtOH-Pd/CaCO3, 60-65°C in a Telescoped Process 87

7.5.2 Kinetic Resolution of Racemic Methylamine: Hydrosilylation by (R,R)-(EBTHI)TiF2/PhSiH3 Catalytic System 88

7.5.3 Catalytic Epimerization of the Trans- to the Cis-Isomer of Sertralilne 90

7.5.4 Stereoselective Reduction of Tetralone by Chiral Diphenyloxazaborolidine 91

7.6 Desymmetrization of Oxabenzonorbornadiene, Suzuki Coupling of Arylboronic Acids and Vinyl Halides 92

7.7 Pd-Catalyzed (Tsuji-Trost) Coupling of Arylboronic Acids and Allylic Esters 94

7.8 Simulated Moving Bed in the Commercial Production of Sertaline 97

7.9 Conclusion 101

References 101

8 1,2-Dihydroquinolines 103

8.1 Introduction 103

8.2 Glucocorticoid Receptor 103

8.3 Asymmetric Organocatalysis: Introducing a Thiourea Catalyst for the Petasis Reaction 105

8.3.1 General Consideration of the Petasis Reaction 106

8.3.2 Catalytic, Enantioselective Petasis Reaction 109

8.4 Multi-component Reactions: General Concept and Examples 112

8.4.1 General Concept of Multi-component Reactions 112

8.4.2 Efficient, Isocyanide-Based Ugi Multi-component Reactions 113

References 115

9 (-) -Menthol 117

9.1 Introduction 117

9.2 Natural Sources and First Technological Production of (-) -Menthol 118

9.3 Enantioselective Allylic Amine-Enamine-Imine Rearrangement, Catalysed by Rh(I)-(-) -BINAP Complex 119

9.4 Production Scale Synthesis of Both Enantiomers 122

9.5 Conclusion 123

References 123

10 Fexofenadine Hydrochloride 125

10.1 Introduction 125

10.2 Histamine Receptors as Biological Targets for Anti-allergy Drugs 126

10.3 Absolute Configuration and "Racemic Switch" 127

10.4.1 ZnBr2-Catalyzed Rearrangement of α-Haloketones to Terminal Carboxylic Acids 131

10.4.2 Microbial Oxidation of Non-activated C-H Bond 135

10.4.3 Bioisosterism: Silicon Switch of Fexofenadine to Sila-Fexofenadine 137

10.5 Conclusion 139

References 139

11 Montelukast Sodium 141

11.1 Introduction 141

11.2 Leukotriene D4 Receptor (LTD4), CysLT-1 Receptor Antagonists 142

11.3 Hydroboration of Ketones with Boranes from α-Pinenes and the Non-linear Effect in Asymmetric Reactions 144

11.4 Ru(II) Catalyzed Enantioselective Hydrogen Transfer 148

11.5 Biocatalytic Reduction with Ketoreductase KRED (KetoREDuctase) 150

11.6 CeCl3-THF Solvate as a Promoter of the Grignard Reaction: Phase Transfer Catalysis 150

11.7 Conclusion 152

References 153

12 Thilactone Peptides as Antibacterial Peptidomimetics 155

12.1 Introduction 155

12.2 Virulence and Quououm-Sensing System of Stapyylococcus aureus 156

12.3 Development of Chemical Ligation in Peptide Synthesis 158

12.4 Development of Native Chemical Ligation: Chemoselectivity in Peptide Synthesis 160

12.5 Development of NCL in Thiolactone Petide Synthesis 163

12.6 Conclusion 167

References 167

13 Efavirenz 169

13.1 Introduction 169

13.2 HIV-1 Reverse Transcriptase Inhibitors 170

13.2.1 Setric Interactions at the Active Site 171

13.3 Asymmetric Addition of Alkyne Anion to C=O Bond with Formation of Chiral Li+ Aggregates 173

13.3.1 Mechanism of the Chirality Transfer 173

13.3.2 Equilibration of Lithium Aggregates and the Effect of Their Relative Stability on Enantioselectivity 175

13.4 Scale-up of Alkynylation Promoted by the Use fo Et2Zn 176

13.5 Conclusion 177

References 177

14 Paclitaxel 179

14.1 Introduction 179

14.2 Disturbed Dynamics of Cellular Microtubules by Binding to β-Tubulin 180

14.3 Three Selected Synthetic Transformations on the Pathway to Paclitaxel 181

14.3.1 Intramolecular Heck Reaction on the Synthetic Route to Baccatin III 182

14.3.2 Trifunctional Catalyst for Biomimetic Synthesis of Chiral Diols: Synthesis of the Paclitaxel Side-Chain 185

14.3.3 Zr-Complex Catalysis in the Reductive N-deacylation of Taxanes to the Primary Amine, the Key Precursor of Paclitaxel 192

14.4 Conclusion 194

References 194

15 Neoglycoconjugate 197

15.1 Introduction 197

15.2 Human, α-1,3-Fucosyltransferase IV (Fuc-T) 198

15.3 Click Chemistry: Energetically Preferred Reactions 200

15.4 Target-Guided Synthesis or Freeze-Frame Click Chemistry 202

15.5 Application of Click Chemistry to the Synthesis of Neoglycoconjugate 1 205

15.6 Conclusion 207

References 207

16 12-Aza-Epothilones 209

16.1 Introduction 209

16.2 Epothilones: Mechanism of Action and Structure-Activity Relationships 210

16.3 Extensive vs. Peripheral Structure Modifications of Natural Products 212

16.4 Ring Closure Metathesis: An Efficient Approach to Macrocyclic "Non-natural Natural Products" 213

16.5 Diimide Reduction of the Allylic C=C Bond 220

16.6 Conclusion 222

References 222

Synthetic Methods and Concepts Discussed in the Chapters 225

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